Computational Chemistry
Visualization of the Stillinger-Weber potential showing the two-body radial term and three-body angular penalty

Stillinger-Weber Potential for Silicon

This foundational work proposes the Stillinger-Weber potential, a 3-body interaction model that successfully stabilizes the diamond crystal structure of silicon and reproduces its liquid properties, overcoming the limitations of standard pair potentials.

Computational Chemistry
Graph of the Lennard-Jones 12-6 potential showing the characteristic attractive and repulsive forces

Thermal Conductivity of the Lennard-Jones Fluid

This paper validates the homogeneous Evans method for calculating thermal conductivity against experimental Argon data. It demonstrates broad agreement across the phase diagram but identifies significant non-monotonic behavior and enhanced long-time tails near the critical point.

Computational Chemistry
Delayed convolution approximation for distinct Van Hove function showing comparison between simulated data and theoretical model

Correlations in Motion of Atoms in Liquid Argon

This seminal work validated the use of classical Molecular Dynamics for simulating liquids, revealing the ‘cage effect’ in velocity autocorrelation and establishing the standard predictor-corrector integration algorithms for N-body problems.

Computational Chemistry
Visualization of argon dimer on fcc(111) surface

Diffusion of Adatom Dimers on (111) Surfaces

This molecular dynamics study reveals that adatom dimers on fcc(111) surfaces exhibit simultaneous multiple jumps at intermediate temperatures, migrating with mobility comparable to single adatoms.

Planetary Science
Venus as seen by Mariner 10, showing swirling cloud patterns in the dense atmosphere

Venus Evolution Through Time

A comprehensive 2023 roadmap for Venus exploration synthesizing open questions about the planet’s evolution from potentially habitable to extreme greenhouse state, detailing the coordinated VERITAS, DAVINCI, and EnVision missions planned for the 2030s and identifying future technology requirements for answering fundamental habitability questions.

Computational Chemistry
Müller-Brown Potential Energy Surface showing the three minima and two saddle points

Müller-Brown Potential

A two-dimensional analytical potential energy surface introduced in 1979 for testing optimization algorithms. It features three minima and curved transition pathways that evaluate an algorithm’s ability to navigate non-trivial topologies.

Computational Chemistry
Müller-Brown Potential Energy Surface showing the three minima and two saddle points

Implementing the Müller-Brown Potential in PyTorch

Step-by-step implementation of the classic Müller-Brown potential in PyTorch, with performance comparisons between analytical and automatic differentiation approaches for molecular dynamics and machine learning applications.

Computational Chemistry
Muller-Brown potential energy surface

Müller-Brown Basin MA: Langevin Dynamics Simulation

Observe confined particle motion in the deep reactant well of the Müller-Brown potential. This simulation demonstrates thermal motion within a stable energy minimum at -146.70 kJ/mol.

Computational Chemistry
Muller-Brown potential energy surface

Müller-Brown Basin MB: Langevin Dynamics Simulation

Watch particle dynamics in the product minimum of the Müller-Brown potential. This simulation shows intermediate thermal motion behavior at -108.17 kJ/mol energy level.

Computational Chemistry
Müller-Brown Potential Energy Surface showing the three minima and two saddle points

Müller-Brown Potential: A PyTorch ML Testbed

A high-performance, GPU-accelerated PyTorch testbed for ML-MD algorithms featuring JIT-compiled analytical Jacobian force kernels achieving 3-10x speedup over autograd, robust Langevin dynamics with Velocity-Verlet integration, and modular architecture designed as ground-truth validation for novel machine learning approaches in molecular dynamics.

Computational Chemistry
Muller-Brown potential energy surface

Müller-Brown Transition: Langevin Dynamics Simulation

Experience rare transition events between energy basins in this extended Müller-Brown simulation. Watch as particles overcome energy barriers to explore different regions of the potential energy landscape.

Computational Chemistry
Radial distribution function of liquid argon

Liquid Argon: LAMMPS Simulation

Explore the molecular dynamics of liquid argon in this fundamental LAMMPS simulation. This classic system demonstrates liquid-state behavior and serves as a benchmark for molecular dynamics methods.