Computational Chemistry

Platinum Adatom Diffusion on Pt(100): LAMMPS Simulation

LAMMPS molecular dynamics simulation of platinum adatom diffusion on a Pt(100) surface, showing atomic mobility …

Scientific Computing
Energy conservation plot showing kinetic, potential, and total energy oscillations for a copper adatom diffusion simulation

Automated Adatom Diffusion Workflow

Python-wrapped reference implementation for surface diffusion simulations using LAMMPS and EAM potentials, with …...

Computational Chemistry
Molecular visualization of a methionine dipeptide structure from MD simulation

Generating Mini-Protein Trajectories with GROMACS

Systematic GROMACS workflows for simulating mini-proteins across multiple amino acids to generate diverse MD …

Computational Chemistry
Molecular visualization of a methionine dipeptide structure from MD simulation

Mini-Protein Trajectory Generation

Automated GROMACS pipeline generating high-fidelity MD trajectories with atomic force extraction for Neural Network …...