Mini Proteins: GROMACS Scripts for Generating Trajectories of Mini Proteins
This repository contains scripts for generating trajectories of mini proteins using GROMACS. Mini proteins are small proteins with only a few amino acids, and they are frequently used as test cases for new methods in molecular dynamics, from new force fields to new sampling algorithms. This repository contains scripts for generating trajectories of mini proteins, including alanine dipeptide, glycine dipeptide, isoleucine dipeptide, leucine dipeptide, methionine dipeptide, phenylalanine dipeptide, proline dipeptide, tryptophan dipeptide, and valine dipeptide.