Molecular Simulation
Ball model representation of a crystal surface with steps, kinks, adatoms, and vacancies showing various surface features

LAMMPS Tutorial: Copper and Platinum Adatom Diffusion

Step-by-step LAMMPS tutorial for simulating copper and platinum adatom diffusion. Learn surface dynamics simulation, trajectory analysis, and how atomic mass affects diffusion for machine learning datasets.

Molecular Simulation
Adatom surface diffusion trajectory on FCC metal surface

Platinum Adatom Diffusion on Pt(100): LAMMPS Simulation

Visualize platinum atom diffusion on crystal surfaces in this LAMMPS molecular dynamics simulation. Understand surface mobility mechanisms crucial for catalysis and materials design.

Molecular Simulation
Energy conservation plot showing kinetic, potential, and total energy oscillations for a copper adatom diffusion simulation

Automated Adatom Diffusion Workflow

A LAMMPS and EAM workflow simulating adatom diffusion on copper and platinum FCC surfaces, with a Python layer for energy and trajectory diagnostics.

Molecular Simulation
Molecular visualization of a methionine dipeptide structure from MD simulation

Mini-Protein Trajectory Generation

An automated GROMACS pipeline generating ML-ready molecular dynamics datasets: capped dipeptides across nine residues, with atomic forces at 0.1 ps resolution.